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What do I do if HMRC check my R&D claim?

HMRC have recently introduced measures to combat fraud within R&D, including lowering the SME tax relief and increasing compliance requirements, as Ant Lalsing details in his article here. With increased HMRC scrutiny, it’s more likely you may receive correspondence from HMRC regarding your company’s R&D claim.

Why might HMRC check my R&D claim?

HMRC might decide to check your R&D claim for several reasons, but common underlying factors include:

What can HMRC do?

HMRC have several options if they suspect an R&D claim might be fraudulent:

  • HMRC may send a ‘one to many’ letter, commonly referred to as a ‘nudge letter’. This might be if HMRC are targeting a group of companies at once. For example, a nudge letter campaign in August 2023 targeted nursing and care homes submitting R&D claims, as the industry is not one usually associated with R&D. The purpose of nudge letter campaigns is to prompt a review of the validity of the R&D claim and these letters encourage you to make any corrections voluntarily.
  • HMRC can use their powers to ‘correct’ your company’s CT600 tax return. If this happens, HMRC might simply remove the R&D claim from the tax return. If you disagree, you are required to submit an amended CT600.
  • HMRC can open a formal enquiry or compliance check into your tax return which will focus on the R&D claim, but HMRC may then start investigating other aspects of the company’s tax affairs.
  • Instead of or in addition to opening an enquiry, HMRC may send what’s called a Schedule 36 notice, which is a request for further information and documents. Occasionally HMRC’s request can be excessive and it’s important to remember that they should only request information and documents that are ‘reasonably required’ to check the company’s tax position.
  • Where HMRC are out of time to open an enquiry, they can make discovery assessments. The time limits to do so depend on the behaviour that has caused the loss of tax. At the moment, HMRC are more likely to request further information or open an enquiry, however in future if HMRC believe they have missed a fraudulent claim they may rely more on discovery assessments.

What should I do if HMRC enquire into my R&D claim?

While HMRC investigate an R&D claim, they will refuse any pay-outs of R&D tax credit claims if you have claimed a cash credit, or in cases where R&D reduces the overall corporation tax liability HMRC will expect the CT liability to be due without the R&D relief deducted. It will therefore be necessary to engage with HMRC in order to receive the relief you believe to be due.   

These are a few things you should bear in mind if you receive correspondence from HMRC regarding your R&D claim:

In all cases we recommend that you consult a trusted adviser to support in corresponding with HMRC, and importantly, do not ignore any correspondence from HMRC in the hope it will go away as this will likely make matters worse in the long run.  

Our approach at Menzies is to review the merits of HMRC’s challenge and correct any misunderstandings on HMRC’s part to help achieve an early resolution, while ensuring you know your rights as a taxpayer and are complying only with reasonable and proportionate requests from HMRC.

For support with any HMRC checks into your R&D claim, contact our Tax Disputes and Disclosures Team or contact us below:

Call our free confidential hotline – 07813003194